[vistrails-dev] [GIT] VisTrails: V1.0 bug fixes

git-noreply at vistrails.org git-noreply at vistrails.org
Thu Jan 19 13:05:17 EST 2012


The project "VisTrails":

The branch, sahm has been updated
       via  986a535856581038236fe07915a4feb1da3c9d6b (commit)
      from  320bc26351731b8509fee705079a5f2ce3a54db3 (commit)


- Log -----------------------------------------------------------------
commit 986a535856581038236fe07915a4feb1da3c9d6b
Author: Colin Talbert <talbertc at usgs.gov>
Date:   Thu Jan 19 11:04:43 2012 -0700

V1.0 bug fixes

-----------------------------------------------------------------------

Summary of changes:
 vistrails/packages/sahm/SAHM_UsersGuide.docx       |  Bin 0 -> 1755501 bytes
 vistrails/packages/sahm/SahmOutputViewer.py        |  386 ++--
 vistrails/packages/sahm/SelectAndTestFinalModel.py |  480 ++++
 vistrails/packages/sahm/SelectPredictorsLayers.py  |   31 +-
 vistrails/packages/sahm/__init__.py                |    6 +-
 vistrails/packages/sahm/init.py                    |  344 ++--
 .../sahm/pySAHM/FieldDataAggreagateAndWeight.py    |  133 +-
 vistrails/packages/sahm/pySAHM/MDSBuilder.py       |   65 +-
 vistrails/packages/sahm/pySAHM/MaxentRunner.py     |   14 +-
 vistrails/packages/sahm/pySAHM/PARC.py             |  204 ++-
 .../packages/sahm/pySAHM/RasterFormatConverter.py  |    2 +-
 .../sahm/pySAHM/Resources/R_Modules/AppendOut.r    |  249 +--
 .../pySAHM/Resources/R_Modules/BRT.helper.fcts.r   | 1768 +++++++++++++++
 .../sahm/pySAHM/Resources/R_Modules/CalcStats.r    |   20 +-
 .../Resources/R_Modules/ConfusionMatrixPlot.r      |  122 ++
 .../Resources/R_Modules/CrossValidationSplit.r     |   36 +-
 .../sahm/pySAHM/Resources/R_Modules/EvalStats.r    |    2 +-
 .../Resources/R_Modules/EvalStatsHelperFcts.r      |    8 +-
 .../pySAHM/Resources/R_Modules/EvaluateNewData.r   |  120 +
 .../pySAHM/Resources/R_Modules/FIT_BRT_pluggable.r | 2283 +-------------------
 .../pySAHM/Resources/R_Modules/FIT_GLM_pluggable.r |  549 +-----
 .../Resources/R_Modules/FIT_MARS_pluggable.r       | 1500 +-------------
 .../pySAHM/Resources/R_Modules/FIT_RF_pluggable.r  |  434 +----
 .../sahm/pySAHM/Resources/R_Modules/FitModels.r    |  160 ++
 .../pySAHM/Resources/R_Modules/GLM.helper.fcts.r   |  173 ++
 .../pySAHM/Resources/R_Modules/LoadRequiredCode.r  |   15 +-
 .../pySAHM/Resources/R_Modules/MARS.helper.fcts.r  |  387 +----
 .../sahm/pySAHM/Resources/R_Modules/PairsExplore.r |    8 +-
 .../sahm/pySAHM/Resources/R_Modules/PlaceSave.r    |   28 +
 .../pySAHM/Resources/R_Modules/RF.helper.fcts.r    |    5 +
 .../pySAHM/Resources/R_Modules/ResidualImage.r     |   59 +-
 .../Resources/R_Modules/ResidualImageMoransI.r     |    8 +-
 .../sahm/pySAHM/Resources/R_Modules/SetWeights.r   |  122 ++
 .../pySAHM/Resources/R_Modules/TestTrainSplit.r    |   26 +-
 .../Resources/R_Modules/Testing/QuickDebug.r       |  103 +-
 .../Resources/R_Modules/Testing/RunConfusionPlot.r |   24 +
 .../R_Modules/Testing/RunCrossValidation.r         |    8 +-
 .../Resources/R_Modules/Testing/RunPairsPlot.r     |  115 +
 .../Resources/R_Modules/Testing/RunSetWeights.r    |   12 +
 .../R_Modules/Testing/RunTestTrainSplit.r          |    8 +-
 .../Resources/R_Modules/Testing/YetAnotherDebug.r  |   51 +-
 .../R_Modules/Testing/YetAnotherDebugOneFct.r      |   78 +
 .../pySAHM/Resources/R_Modules/calc.deviance.r     |   48 +
 .../sahm/pySAHM/Resources/R_Modules/calibration.r  |   44 +
 .../pySAHM/Resources/R_Modules/capture.stats.r     |  107 +-
 .../sahm/pySAHM/Resources/R_Modules/check.libs.r   |    7 +-
 .../sahm/pySAHM/Resources/R_Modules/chk.libs.r     |   17 +
 .../sahm/pySAHM/Resources/R_Modules/cv.fct.r       |  292 +++
 .../sahm/pySAHM/Resources/R_Modules/cv.fctNew.r    |  291 +++
 .../pySAHM/Resources/R_Modules/generic.model.fit.r |  203 ++
 .../sahm/pySAHM/Resources/R_Modules/make.auc.r     |  258 ++-
 .../sahm/pySAHM/Resources/R_Modules/mars.cv.r      |  212 ++
 .../sahm/pySAHM/Resources/R_Modules/place.save.r   |   31 +
 .../sahm/pySAHM/Resources/R_Modules/pred.fct.r     |   58 +
 .../sahm/pySAHM/Resources/R_Modules/proc.tiff.r    |   41 +-
 .../sahm/pySAHM/Resources/R_Modules/read.ma.r      |  167 +-
 .../pySAHM/Resources/R_Modules/response.curves.r   |  113 +
 .../packages/sahm/pySAHM/Resources/R_Modules/roc.r |   27 +
 vistrails/packages/sahm/pySAHM/singlePARC.py       |   11 +-
 vistrails/packages/sahm/pySAHM/utilities.py        |   12 +-
 vistrails/packages/sahm/sahm_picklists.py          |   40 +-
 vistrails/packages/sahm/utils.py                   |  152 +-
 62 files changed, 6005 insertions(+), 6272 deletions(-)
 create mode 100644 vistrails/packages/sahm/SAHM_UsersGuide.docx
 create mode 100644 vistrails/packages/sahm/SelectAndTestFinalModel.py
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/BRT.helper.fcts.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/ConfusionMatrixPlot.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/EvaluateNewData.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/FitModels.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/GLM.helper.fcts.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/PlaceSave.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/RF.helper.fcts.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/SetWeights.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/Testing/RunConfusionPlot.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/Testing/RunPairsPlot.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/Testing/RunSetWeights.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/Testing/YetAnotherDebugOneFct.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/calc.deviance.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/calibration.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/chk.libs.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/cv.fct.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/cv.fctNew.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/generic.model.fit.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/mars.cv.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/place.save.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/pred.fct.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/response.curves.r
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/roc.r

-- 
VisTrails


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