[vistrails-dev] [GIT] VisTrails: Tutorial Data and vt

git-noreply at vistrails.org git-noreply at vistrails.org
Wed Jan 25 11:33:47 EST 2012


The project "VisTrails":

The branch, sahm has been updated
       via  1a8b85bd12fa095045ee5a2126b0a9eb2d740471 (commit)
       via  358d4f4a4d2399d3de36fe3c4d07dfad15ab6acb (commit)
      from  986a535856581038236fe07915a4feb1da3c9d6b (commit)


- Log -----------------------------------------------------------------
commit 1a8b85bd12fa095045ee5a2126b0a9eb2d740471
Author: Colin Talbert <talbertc at usgs.gov>
Date:   Wed Jan 25 09:33:16 2012 -0700

Tutorial Data and vt
Still in Progress but ready for CSU

commit 358d4f4a4d2399d3de36fe3c4d07dfad15ab6acb
Author: Colin Talbert <talbertc at usgs.gov>
Date:   Wed Jan 25 09:30:41 2012 -0700

Numerous minor changes and bugfixes
in prep for stabilizing SAHM 1.0

-----------------------------------------------------------------------

Summary of changes:
 examples/SAHM_example/02_GYA_Dalmatiantoadflax.csv |62448 -------------------
 examples/SAHM_example/04_GYA_Canadathistle.csv     |62738 --------------------
 examples/SAHM_example/06_GYA_Leafyspurge.csv       |56204 ------------------
 examples/SAHM_example/DemoWorkflow.vt              |  Bin 1793553 -> 0 bytes
 examples/SAHM_example/DemoWorkflow_mod.vt          |  Bin 2682585 -> 0 bytes
 .../PredictorLayers/Climate/DAYMET_WGS84/Thumbs.db |  Bin 7168 -> 0 bytes
 .../Climate/DAYMET_WGS84/bio_1_wgs84.tfw           |    6 -
 .../Climate/DAYMET_WGS84/bio_1_wgs84.tif           |  Bin 27532244 -> 0 bytes
 .../Climate/DAYMET_WGS84/bio_1_wgs84.tif.aux.xml   | 1671 -
 .../Climate/DAYMET_WGS84/bio_1_wgs84.tif.ovr       |  Bin 1499945 -> 0 bytes
 .../Climate/DAYMET_WGS84/bio_1_wgs84.tif.vat.dbf   |  Bin 6292 -> 0 bytes
 .../Climate/DAYMET_WGS84/bio_2_wgs84.tfw           |    6 -
 .../Climate/DAYMET_WGS84/bio_2_wgs84.tif           |  Bin 98732 -> 0 bytes
 .../Climate/DAYMET_WGS84/bio_2_wgs84.tif.aux.xml   | 1381 -
 .../Climate/DAYMET_WGS84/bio_2_wgs84.tif.ovr       |  Bin 7115 -> 0 bytes
 .../Climate/DAYMET_WGS84/bio_2_wgs84.tif.vat.dbf   |  Bin 5190 -> 0 bytes
 .../Climate/PRISM/ppt_1971_2000_011.img            |  Bin 206829 -> 0 bytes
 .../Climate/PRISM/ppt_1971_2000_011.img.aux.xml    |   25 -
 .../Climate/PRISM/ppt_1971_2000_011.rrd            |  Bin 70478 -> 0 bytes
 .../PredictorLayers/Elevation/Thumbs.db            |  Bin 3584 -> 0 bytes
 .../SAHM_example/PredictorLayers/Elevation/dem.tfw |    6 -
 .../SAHM_example/PredictorLayers/Elevation/dem.tif |  Bin 34870004 -> 0 bytes
 .../PredictorLayers/Elevation/dem.tif.aux.xml      |    6 -
 .../PredictorLayers/Elevation/dem.tif.ovr          |  Bin 5060635 -> 0 bytes
 .../SAHM_example/PredictorLayers/NLCD/Thumbs.db    |  Bin 11776 -> 0 bytes
 .../PredictorLayers/NLCD/nlcd01_11.tfw             |    6 -
 .../PredictorLayers/NLCD/nlcd01_11.tif             |  Bin 3901866 -> 0 bytes
 .../PredictorLayers/NLCD/nlcd01_11.tif.aux.xml     |  121 -
 .../PredictorLayers/NLCD/nlcd01_11.tif.ovr         |  Bin 251694 -> 0 bytes
 .../PredictorLayers/NLCD/nlcd01_11.tif.vat.dbf     |  Bin 402 -> 0 bytes
 .../PredictorLayers/NLCD/nlcd01_11.tif.xml         |    2 -
 examples/SAHM_example/Thumbs.db                    |  Bin 4096 -> 0 bytes
 examples/SAHM_example/template1km.aux              |  Bin 438503 -> 0 bytes
 examples/SAHM_example/template1km.tif              |  Bin 67528 -> 0 bytes
 examples/SAHM_example/template1km.tif.xml          |    3 -
 examples/SAHM_example/template_250m.aux            |  Bin 534417 -> 0 bytes
 examples/SAHM_example/template_250m.tif            |  Bin 920744 -> 0 bytes
 examples/SAHM_example/template_250m.tif.xml        |    3 -
 examples/Sahm_example/CO_Lida.csv                  | 2253 +
 .../NDVI_seasonlengths1_Average.tfw                |    6 +
 .../NDVI_seasonlengths1_Average.tif                |  Bin 0 -> 429658 bytes
 .../NDVI_seasonlengths1_Average.tif.aux.xml        |   24 +
 .../NDVI_seasonlengths1_Average.tif.ovr            |  Bin 0 -> 109625 bytes
 .../NDVI_seasonlengths1_Average.tif.xml            |    2 +
 examples/Sahm_example/CovariateLayers/Thumbs.db    |  Bin 0 -> 4096 bytes
 .../CovariateLayers/bio_03_1971_2000_800m.img      |  Bin 0 -> 46375 bytes
 .../bio_03_1971_2000_800m.img.aux.xml              |   28 +
 .../CovariateLayers/bio_03_1971_2000_800m.img.xml  |    1 +
 .../CovariateLayers/bio_03_1971_2000_800m.rrd      |  Bin 0 -> 21288 bytes
 .../CovariateLayers/bio_06_1971_2000_800m.img      |  Bin 0 -> 46335 bytes
 .../bio_06_1971_2000_800m.img.aux.xml              |   28 +
 .../CovariateLayers/bio_06_1971_2000_800m.img.xml  |    1 +
 .../CovariateLayers/bio_06_1971_2000_800m.rrd      |  Bin 0 -> 21288 bytes
 .../CovariateLayers/bio_07_1971_2000_800m.img      |  Bin 0 -> 46280 bytes
 .../bio_07_1971_2000_800m.img.aux.xml              |   28 +
 .../CovariateLayers/bio_07_1971_2000_800m.img.xml  |    1 +
 .../CovariateLayers/bio_07_1971_2000_800m.rrd      |  Bin 0 -> 21288 bytes
 .../CovariateLayers/bio_15_1971_2000_800m.img      |  Bin 0 -> 46375 bytes
 .../bio_15_1971_2000_800m.img.aux.xml              |   28 +
 .../CovariateLayers/bio_15_1971_2000_800m.img.xml  |    1 +
 .../CovariateLayers/bio_15_1971_2000_800m.rrd      |  Bin 0 -> 21288 bytes
 .../CovariateLayers/bio_17_1971_2000_800m.img      |  Bin 0 -> 46375 bytes
 .../bio_17_1971_2000_800m.img.aux.xml              |   28 +
 .../CovariateLayers/bio_17_1971_2000_800m.img.xml  |    1 +
 .../CovariateLayers/bio_17_1971_2000_800m.rrd      |  Bin 0 -> 21288 bytes
 .../CovariateLayers/bio_18_1971_2000_800m.img      |  Bin 0 -> 46375 bytes
 .../bio_18_1971_2000_800m.img.aux.xml              |   28 +
 .../CovariateLayers/bio_18_1971_2000_800m.img.xml  |    1 +
 .../CovariateLayers/bio_18_1971_2000_800m.rrd      |  Bin 0 -> 21288 bytes
 .../CovariateLayersState/bio_06_1971_2000_800m.img |  Bin 0 -> 1735807 bytes
 .../bio_06_1971_2000_800m.img.aux.xml              |   28 +
 .../bio_06_1971_2000_800m.img.xml                  |    1 +
 .../CovariateLayersState/bio_06_1971_2000_800m.rrd |  Bin 0 -> 464034 bytes
 .../CovariateLayersState/bio_07_1971_2000_800m.img |  Bin 0 -> 1739537 bytes
 .../bio_07_1971_2000_800m.img.aux.xml              |   28 +
 .../bio_07_1971_2000_800m.img.xml                  |    1 +
 .../CovariateLayersState/bio_07_1971_2000_800m.rrd |  Bin 0 -> 464034 bytes
 examples/Sahm_example/DalmatianToadflax.csv        | 3821 ++
 examples/Sahm_example/RMNP_Bromus.csv              |  444 +
 examples/Sahm_example/Tutorial.vt                  |  Bin 0 -> 8776 bytes
 examples/Sahm_example/romoveg100mr/dblbnd.adf      |  Bin 0 -> 32 bytes
 examples/Sahm_example/romoveg100mr/hdr.adf         |  Bin 0 -> 308 bytes
 examples/Sahm_example/romoveg100mr/metadata.xml    |    2 +
 examples/Sahm_example/romoveg100mr/prj.adf         |    7 +
 examples/Sahm_example/romoveg100mr/sta.adf         |  Bin 0 -> 32 bytes
 examples/Sahm_example/romoveg100mr/vat.adf         |  Bin 0 -> 192 bytes
 examples/Sahm_example/romoveg100mr/w001001.adf     |  Bin 0 -> 239512 bytes
 examples/Sahm_example/romoveg100mr/w001001x.adf    |  Bin 0 -> 1972 bytes
 examples/Sahm_example/romoveg800mr/dblbnd.adf      |  Bin 0 -> 32 bytes
 examples/Sahm_example/romoveg800mr/hdr.adf         |  Bin 0 -> 308 bytes
 examples/Sahm_example/romoveg800mr/metadata.xml    |    2 +
 examples/Sahm_example/romoveg800mr/prj.adf         |    7 +
 examples/Sahm_example/romoveg800mr/sta.adf         |  Bin 0 -> 32 bytes
 examples/Sahm_example/romoveg800mr/vat.adf         |  Bin 0 -> 128 bytes
 examples/Sahm_example/romoveg800mr/w001001.adf     |  Bin 0 -> 5726 bytes
 examples/Sahm_example/romoveg800mr/w001001x.adf    |  Bin 0 -> 300 bytes
 vistrails/packages/sahm/PortDocs.csv               |   67 +
 vistrails/packages/sahm/SAHM_UsersGuide.docx       |  Bin 1755501 -> 3445809 bytes
 vistrails/packages/sahm/SelectPredictorsLayers.py  |   93 +-
 vistrails/packages/sahm/__init__.py                |    2 +-
 vistrails/packages/sahm/init.py                    |  759 +-
 vistrails/packages/sahm/layers.exampledata.csv     |   12 +-
 vistrails/packages/sahm/pySAHM/PARC.py             |    6 +-
 .../sahm/pySAHM/Resources/R_Modules/AppendOut.r    |   52 +-
 .../Resources/R_Modules/ConfusionMatrixPlot.r      |   31 +-
 .../pySAHM/Resources/R_Modules/EvaluateNewData.r   |   70 +-
 .../pySAHM/Resources/R_Modules/FIT_RF_pluggable.r  |    8 +-
 .../sahm/pySAHM/Resources/R_Modules/FitModels.r    |   16 +-
 .../pySAHM/Resources/R_Modules/LoadRequiredCode.r  |    2 -
 .../sahm/pySAHM/Resources/R_Modules/PairsExplore.r |    8 +-
 .../Resources/R_Modules/Testing/BRTParameterTest.r |  102 +
 .../Resources/R_Modules/Testing/QuickDebug.r       |   28 +-
 .../Resources/R_Modules/Testing/RunPairsPlot.r     |   13 +-
 .../R_Modules/Testing/YetAnotherDebugOneFct.r      |    8 +-
 .../sahm/pySAHM/Resources/R_Modules/cv.fct.r       |    7 +-
 .../pySAHM/Resources/R_Modules/generic.model.fit.r |    9 +-
 .../sahm/pySAHM/Resources/R_Modules/make.auc.r     |   76 +-
 .../sahm/pySAHM/Resources/R_Modules/place.save.r   |    4 +-
 .../sahm/pySAHM/Resources/R_Modules/pred.fct.r     |   25 +-
 .../sahm/pySAHM/Resources/R_Modules/proc.tiff.r    |   18 +-
 .../pySAHM/Resources/R_Modules/response.curves.r   |   21 +-
 vistrails/packages/sahm/utils.py                   |   38 +-
 122 files changed, 7739 insertions(+), 185162 deletions(-)
 delete mode 100644 examples/SAHM_example/02_GYA_Dalmatiantoadflax.csv
 delete mode 100644 examples/SAHM_example/04_GYA_Canadathistle.csv
 delete mode 100644 examples/SAHM_example/06_GYA_Leafyspurge.csv
 delete mode 100644 examples/SAHM_example/DemoWorkflow.vt
 delete mode 100644 examples/SAHM_example/DemoWorkflow_mod.vt
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/Thumbs.db
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_1_wgs84.tfw
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_1_wgs84.tif
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_1_wgs84.tif.aux.xml
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_1_wgs84.tif.ovr
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_1_wgs84.tif.vat.dbf
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_2_wgs84.tfw
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_2_wgs84.tif
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_2_wgs84.tif.aux.xml
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_2_wgs84.tif.ovr
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/DAYMET_WGS84/bio_2_wgs84.tif.vat.dbf
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/PRISM/ppt_1971_2000_011.img
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/PRISM/ppt_1971_2000_011.img.aux.xml
 delete mode 100644 examples/SAHM_example/PredictorLayers/Climate/PRISM/ppt_1971_2000_011.rrd
 delete mode 100644 examples/SAHM_example/PredictorLayers/Elevation/Thumbs.db
 delete mode 100644 examples/SAHM_example/PredictorLayers/Elevation/dem.tfw
 delete mode 100644 examples/SAHM_example/PredictorLayers/Elevation/dem.tif
 delete mode 100644 examples/SAHM_example/PredictorLayers/Elevation/dem.tif.aux.xml
 delete mode 100644 examples/SAHM_example/PredictorLayers/Elevation/dem.tif.ovr
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/Thumbs.db
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/nlcd01_11.tfw
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/nlcd01_11.tif
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/nlcd01_11.tif.aux.xml
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/nlcd01_11.tif.ovr
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/nlcd01_11.tif.vat.dbf
 delete mode 100644 examples/SAHM_example/PredictorLayers/NLCD/nlcd01_11.tif.xml
 delete mode 100644 examples/SAHM_example/Thumbs.db
 delete mode 100644 examples/SAHM_example/template1km.aux
 delete mode 100644 examples/SAHM_example/template1km.tif
 delete mode 100644 examples/SAHM_example/template1km.tif.xml
 delete mode 100644 examples/SAHM_example/template_250m.aux
 delete mode 100644 examples/SAHM_example/template_250m.tif
 delete mode 100644 examples/SAHM_example/template_250m.tif.xml
 create mode 100644 examples/Sahm_example/CO_Lida.csv
 create mode 100644 examples/Sahm_example/CovariateLayers/NDVI_seasonlengths1_Average.tfw
 create mode 100644 examples/Sahm_example/CovariateLayers/NDVI_seasonlengths1_Average.tif
 create mode 100644 examples/Sahm_example/CovariateLayers/NDVI_seasonlengths1_Average.tif.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/NDVI_seasonlengths1_Average.tif.ovr
 create mode 100644 examples/Sahm_example/CovariateLayers/NDVI_seasonlengths1_Average.tif.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/Thumbs.db
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_03_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_03_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_03_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_03_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_06_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_06_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_06_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_06_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_07_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_07_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_07_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_07_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_15_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_15_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_15_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_15_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_17_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_17_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_17_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_17_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_18_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_18_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_18_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayers/bio_18_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_06_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_06_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_06_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_06_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_07_1971_2000_800m.img
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_07_1971_2000_800m.img.aux.xml
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_07_1971_2000_800m.img.xml
 create mode 100644 examples/Sahm_example/CovariateLayersState/bio_07_1971_2000_800m.rrd
 create mode 100644 examples/Sahm_example/DalmatianToadflax.csv
 create mode 100644 examples/Sahm_example/RMNP_Bromus.csv
 create mode 100644 examples/Sahm_example/Tutorial.vt
 create mode 100644 examples/Sahm_example/romoveg100mr/dblbnd.adf
 create mode 100644 examples/Sahm_example/romoveg100mr/hdr.adf
 create mode 100644 examples/Sahm_example/romoveg100mr/metadata.xml
 create mode 100644 examples/Sahm_example/romoveg100mr/prj.adf
 create mode 100644 examples/Sahm_example/romoveg100mr/sta.adf
 create mode 100644 examples/Sahm_example/romoveg100mr/vat.adf
 create mode 100644 examples/Sahm_example/romoveg100mr/w001001.adf
 create mode 100644 examples/Sahm_example/romoveg100mr/w001001x.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/dblbnd.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/hdr.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/metadata.xml
 create mode 100644 examples/Sahm_example/romoveg800mr/prj.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/sta.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/vat.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/w001001.adf
 create mode 100644 examples/Sahm_example/romoveg800mr/w001001x.adf
 create mode 100644 vistrails/packages/sahm/PortDocs.csv
 create mode 100644 vistrails/packages/sahm/pySAHM/Resources/R_Modules/Testing/BRTParameterTest.r

-- 
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