[vistrails-dev] [VisTrails] Uvcdat master with vcs3 d features for v2.1.1 (#1003)

David Lonie notifications at github.com
Thu Feb 26 13:26:11 EST 2015


Replaced #15.
You can view, comment on, or merge this pull request online at:

  https://github.com/VisTrails/VisTrails/pull/1003

-- Commit Summary --

  * Bug fixes
  * Begin integrating structured grid plotters
  * Integrate structured grid slicer
  * Fill in leveling functions
  * Add volume renderer
  * opacity graph fixes
  * Merge fixes
  * Merge remote-tracking branch 'origin/uvcdat-dv3d-cpc_viewer_master' into uvcdat-master
  * Commiting so that Carla can get our latest version
  * When I ran the Diagnostics GUI, it wanted to do animations.  It never had before.
  * committing so David and al can see my chages
  * Almost there in GUI need to pass interactorstyle so that resize work
  * still tweaki needed for clicking in window but getting close
  * 1. Nobody else should create a uvcdat_zero_plotspec; supply None instead.  This should make it clear
  * fix comment
  * Clear an old cell the *right* way - thanks to David Koop for telling me how.
  * merged
  * Picker fixes
  * Fix merge errors
  * Remove obsolete code
  * Fix for empty strings in obs sets (usually from the file matching matching a bogus file)
  * Carla's changes to make GUI better
  * Merge remote-tracking branch 'origin/uvcdat-diags-devel2' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-dv3d-fix-numpy' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-vcsVTK' into uvcdat-master
  * Remove unstructured_grid and merge error
  * Merge remote-tracking branch 'origin/uvcdat-dv3d-remove_unstructured_grid' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-433-paraview-warnings' into uvcdat-master
  * Update VTK package for VTK6 changes
  * Add 3d plot type
  * Creat dv3d vcs plot modules
  * Set a template which allows use of the diagnotics package's titles (and do so).
  * Debug dv3d-vcs gui integration
  * Deleted lots of print statements.
  * Merge branch 'uvcdat-diags-devel2' into uvcdat-master
  * Integration fixes
  * Add 3d plot type
  * Creat dv3d vcs plot modules
  * Debug dv3d-vcs gui integration
  * Integration fixes
  * Merge branch 'uvcdat-dv3d-add_dv3d_vcs_templates' of vistrails.org:vistrails into uvcdat-dv3d-add_dv3d_vcs_templates
  * Merge remote-tracking branch 'origin/uvcdat-497-update-vtk-package' into uvcdat-master
  * Add 3d plot type
  * Creat dv3d vcs plot modules
  * Debug dv3d-vcs gui integration
  * Integration fixes
  * Creat dv3d vcs plot modules
  * Integration fixes
  * Fix merge errors
  * Merge branch 'uvcdat-dv3d-add_dv3d_vcs_templates' into uvcdat-master
  * Pass CDMSVar to plot3d
  * Pass CDMSVar to plot3d
  * Merge branch 'uvcdat-dv3d-vcs-integrate_usg' of vistrails.org:vistrails into uvcdat-dv3d-vcs-integrate_usg
  * Fixes an UnboundLocalError
  * bug fixes
  * remove diagnostics
  * Remove DV3D legacy plots
  * Merge branch 'uvcdat-dv3d-remove_legacy_package' into uvcdat-dv3d-vcs-integrate_usg
  * Remove interfering Qt interactor
  * Pass CDMSVar to plot3d
  * bug fixes
  * remove diagnostics
  * Remove DV3D legacy plots
  * Remove interfering Qt interactor
  * Merge branch 'uvcdat-dv3d-vcs-integrate_usg' of vistrails.org:vistrails into uvcdat-dv3d-vcs-integrate_usg
  * Fix exception in cell focus change.
  * Pass CDMSVar to plot3d
  * bug fixes
  * remove diagnostics
  * Remove DV3D legacy plots
  * Remove interfering Qt interactor
  * bug fixes
  * Remove interfering Qt interactor
  * Fix exception in cell focus change.
  * Merge branch 'uvcdat-dv3d-vcs-integrate_usg' of vistrails.org:vistrails into uvcdat-dv3d-vcs-integrate_usg
  * Make USG plot visible at startup
  * Remove focus changed notifier
  * Attempt to fix OpenDAP parse error
  * Exit after an exception before event loop starts
  * Eliminate GUI error messages
  * Unnecessary change to vtDV3D
  * Make sure the error is written to real stderr
  * Make sure that error message is also logged
  * Merge remote-tracking branch 'origin/uvcdat-539-fix-startup-hang' into uvcdat-master
  * Update pipeline helper
  * Fixes a typo when reporting duplicate packages
  * initialize_packages optionally reports missing dependencies
  * Don't cry about missing deps on first run
  * Checks requirements before initializing
  * Don't report MissingRequirements on first run
  * Fixes ParaView's package_requirements()
  * Removes "needed_packages" override
  * Merge remote-tracking branch 'origin/uvcdat-520-fix-dependencies_master' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-520-remove-hardcoded-packages_master' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-520-hide-bad-pkg-errors_master' into uvcdat-master
  * Adds previously required packages to default conf
  * Fixes typo: MissingRequirement should disable pkg
  * Reinstaured vcs toolbar
  * Connect correctly to fixed animation backend
  * Fix play/stop button logic
  * Add config parameters
  * Initialize plots from parameters
  * usg fixes
  * Hook up USG config parameters
  * Begin Hoooking up parameters to prov
  * Merge remote-tracking branch 'origin/uvcdat-490-animation-updates-rebase' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-520-fix-loaded-pkgs' into uvcdat-master
  * Parameter fixes
  * fix prov commands
  * Fix controller update
  * Fix param parsing and trans var handling
  * Removes debug.critical() call from pylab
  * Fix provenence and scripting
  * Fix provenance
  * Merge remote-tracking branch 'origin/uvcdat-dv3d-provenance' into uvcdat-master
  * Move PyQt signal creation to GUI
  * Merge remote-tracking branch 'origin/uvcdat-520-suppress-gui-errors' into uvcdat-master
  * Tom found the issue createInteractor needed 'True' arg instead of 'False'
  * Merge remote-tracking branch 'origin/uvcdat-589-vcs-plot-out-spreadsheet' into uvcdat-master
  * Merge branch 'uvcdat-579-fix-animate-signals' into uvcdat-master
  * fixed issue where editing plot properties would draw new one on top w/o clearing
  * Comment out self.window initialization again
  * Fix interactor problemns
  * Fix sheet ref import
  * Fix sheet reference import
  * Fix spreadsheet import error
  * Fix animation
  * Hook up animation speed
  * rename getAnimationDelay
  * Move some template code from diagnosticsDockWidget.py to uvcdat.py.
  * Change sorting function for plot sets to a natural sort defined in the diagnostics package.
  * Fix a serious bug in the diagnostics GUI where it mattered whether you clicked on Obs1 or Data1 first.
  * Fix bug in check for whether obs exist.
  * Merge remote-tracking branch 'origin/uvcdat-557-hide-importerror-in-plotmanager' into uvcdat-master
  * Merge branch 'uvcdat-dv3d-update_interaction' into uvcdat-master
  * Remove unnecessary diagnostics
  * Merge remote-tracking branch 'origin/uvcdat-509-legend-overdrawn' into uvcdat-master
  * Fix OpenDAP file access error
  * Merge remote-tracking branch 'origin/uvcdat-498-fix-vcs-click-traceback-again' into uvcdat-master
  * Add call to stop animation playback before quitting
  * Stop playback if frame is manually changed
  * Pass anim min max directly to create
  * Disable vcs tool bar for dv3d plots
  * Merge remote-tracking branch 'origin/uvcdat-dv3d-cleanup-pipeline' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-643-fix-anim-change-frame' into uvcdat-master
  * Merge remote-tracking branch 'origin/uvcdat-639-fix-anim-min-max' into uvcdat-master
  * Make closing animations more robust
  * Merge remote-tracking branch 'origin/uvcdat-617-fix-animation-close-issues' into uvcdat-master
  * commenting out the method def test_pvclimate_computed_vars(self)
  * Merge remote-tracking branch 'origin/uvcdat-fix-gui-tests' into uvcdat-master
  * Prevent user from entering incorrect server URL
  * fixed editing of colormaps
  * Merge remote-tracking branch 'origin/uvcdat_issue_677_adjust_cmap' into uvcdat-master
  * Add onClosing handler
  * Fix Qt animation stepper
  * Merge branch 'uvcdat-fix-opendap-parse-error' into uvcdat-master
  * Correctly handle MissingRequirement from packages
  * Removes unused imports
  * Revert "Eliminate GUI error messages"
  * Removes bogus print statements
  * remvoed vcs anim icon
  * Merge branch 'uvcdat_disable_vcs_anim' into uvcdat-master
  * Add PlotButtonNames to plot module input ports
  * Merge remote-tracking branch 'origin/uvcdat-dv3d-fix-missing-port-error' into uvcdat-master
  * Don't create the canvas until the window is shown.
  * Merge branch 'uvcdat_fix_warnings' into uvcdat-master
  * Fix plot parameter init from pipeline
  * Enable state init from vt file
  * Add dfual input plots
  * Fix 3D_Dual_Scalar
  * Removed visit reference from vistrails
  * now save colormaps to files, icons show up
  * adding icon files
  * Code style, missing import
  * Merge branch 'uvcdat-dv3d-Fix_parameter_issues' into uvcdat-master
  * Merge branch 'uvcdat-399-turn-off-visit-warning' into uvcdat-master
  * fix uvcdat #829 and address @remram44 concerns about default edit
  * Merge branch 'uvcdat-master' into uvcdat-issues-830-682-681-save-colormap-show-buttons
  * Merge branch 'uvcdat-issues-830-682-681-save-colormap-show-buttons' of vistrails.org:vistrails into uvcdat-issues-830-682-681-save-colormap-show-buttons
  * In applyClicked, look at what obs set the user had chosen (previously nothing had ever looked at
  * Changes missing startup file from CRITICAL to INFO
  * Merge pull request #2 from UV-CDAT/uvcdat-520-fix-packages
  * A substantial but not major refactoring of how the filter menu is treated for observations.
  * Actually read and use the user-supplied file filter (for model datasets) #1 (i.e. DS1).
  * Merge pull request #3 from UV-CDAT/uvcdat-obs1filter
  * Merge pull request #1 from UV-CDAT/uvcdat-issues-830-682-681-save-colormap-show-buttons
  * Issues for 911 in colormap editor fixed
  * Merge pull request #4 from UV-CDAT/uvcdat-911-colormap-editor-issues
  * Merge pull request #5 from UV-CDAT/uvcdat-animation-enabled
  * reanbled animations
  * Ran formatter
  * Ran checker
  * disable buttons at the bottom when colormap is default and editor is cancel/close and reopen
  * Fixed 911 and 933
  * minor bug fixed in blend function for 933
  * minor bug fixed in blend function for 933
  * minor bug fixed in blend function for 933
  * Removed default colormap buttons disabled function
  * Merge pull request #6 from UV-CDAT/uvcdat-911-extended_issue_with_default_colormap
  * Hide 3D_Dual_Scalar plot
  * Removing the animation icon for 2.1
  * Merge pull request #8 from UV-CDAT/uvcdat_removing_animation_icon
  * Merge pull request #7 from UV-CDAT/uvcdat-vcs3D-hide_3D_dual_scalar_plot
  * Re-enable dual input plots
  * Shrink vtDV3D package.
  * Merge remote-tracking branch 'origin/reduce_size_1' into uvcdat-master
  * Remove more unnecessary files
  * Recover colormaps file
  * Remove spurious refs to CPCPlot
  * Clear cell plot parameters upon cell clear
  * Merge remote-tracking branch 'origin/reduce_size_1' into uvcdat-master
  * Re-enable dual input plots
  * Clear cell plot parameters upon cell clear
  * Merge branch 'uvcdat-vcs3D-features_for_v2.1.1' of https://github.com/UV-CDAT/VisTrails into uvcdat-vcs3D-features_for_v2.1.1
  * Re-enable dual input plots
  * Shrink vtDV3D package.
  * Remove more unnecessary files
  * Recover colormaps file
  * Remove spurious refs to CPCPlot
  * Clear cell plot parameters upon cell clear
  * Ignore pycharm files
  * Merge branch 'uvcdat-vcs3D-features_for_v2.1.1' of github.com:UV-CDAT/VisTrails into uvcdat-vcs3D-features_for_v2.1.1
  * Add 3D config panel
  * Casts QString to str for vcs
  * Casts results from QFileDialog to str
  * Add 3D config panel
  * Hook up config panel
  * Fix config panel
  * Fix config panel for slicers
  * Fix NULL cf exception
  * Fix config reset error
  * Merge pull request #10 from UV-CDAT/fix-qstrings-from-filechoosers
  * Fixes a traceback on cell creation
  * Fixes bug
  * Merge pull request #11 from UV-CDAT/fix-vtkcell-traceback
  * Minor fixes to get_method_signature()
  * Fixes PlotManager#parse_helper_type_str()
  * Fix exception in parm config panel execution
  * Fix bbarWidget = None error in pipeline build
  * Remove spurious vtDV3D refs
  * Merge pull request #12 from UV-CDAT/uvcdat-522-fix-cdms-configure_done
  * Skips "methods" that are actually types (enums)
  * Adds a warning for missing __doc_
  * Merge pull request #13 from UV-CDAT/fix-vtk-pkg
  * fixes issues due to outline/outfill no being part of vcs anymore
  * Fixes a NameError
  * Fixes display pointer on VTK >= 6.2
  * Merge pull request #16 from UV-CDAT/fix-vtkcell-x11
  * Merge pull request #14 from UV-CDAT/remove_outline_outfill
  * Merge uvcdat-master

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    A vistrails/core/uvcdat/plots/DV3D/DV3D_curtain-2.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_data_point_cloud-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_data_point_cloud_plot-1.0.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_demo-1.cfg (22)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_demo-1.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_glyph_array_slicer-1.0.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_glyph_array_slicer-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_hoffmuller-1.0.cfg (18)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_hoffmuller-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_hoffmuller-slicer-1.0.cfg (14)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_hoffmuller-slicer-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_hoffmuller-volume-1.0.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_hoffmuller-volume-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_multi_volume_slicer-1.0.cfg (12)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_multi_volume_slicer-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_scalar_plot-1.0.cfg (12)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_scalar_plot-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_streamline_slicer-1.0.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_streamline_slicer-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_vector_plot-1.0.cfg (20)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_vector_plot-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_glyph-1.0.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_glyph-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_isosurface-1.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_isosurface-1.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_isosurface-2.1.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_isosurface-2.1.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_isosurface-2.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_isosurface-2.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_render-1.0.cfg (13)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_render-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_render_plus_slicer-2.0.cfg (12)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_render_plus_slicer-2.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_slicer-1.0.cfg (12)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_slicer-1.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_slicer-2.0.cfg (12)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_slicer-2.0.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_slicer-2.1.cfg (12)
    A vistrails/core/uvcdat/plots/DV3D/DV3D_volume_slicer-2.1.vt (0)
    A vistrails/core/uvcdat/plots/DV3D/registry.cfg (54)
    A vistrails/core/uvcdat/plots/Matplotlib/histogram.cfg (13)
    A vistrails/core/uvcdat/plots/Matplotlib/matplotlib.vt (0)
    A vistrails/core/uvcdat/plots/Matplotlib/registry.cfg (3)
    A vistrails/core/uvcdat/plots/PVClimate/pvcontourrepresentation.cfg (8)
    A vistrails/core/uvcdat/plots/PVClimate/pvcontourrepresentation.vt (0)
    A vistrails/core/uvcdat/plots/PVClimate/pvslicerepresentation.cfg (7)
    A vistrails/core/uvcdat/plots/PVClimate/pvslicerepresentation.vt (0)
    A vistrails/core/uvcdat/plots/PVClimate/registry.cfg (7)
    A vistrails/core/uvcdat/plots/ParaView/paraview.vt (0)
    A vistrails/core/uvcdat/plots/ParaView/paraview_simple.cfg (17)
    A vistrails/core/uvcdat/plots/ParaView/registry.cfg (6)
    A vistrails/core/uvcdat/plots/VTK/registry.cfg (3)
    A vistrails/core/uvcdat/plots/VTK/volume_rendering.cfg (14)
    A vistrails/core/uvcdat/plots/VTK/volume_rendering.vt (0)
    A vistrails/core/uvcdat/plots/VisIt/registry.cfg (11)
    A vistrails/core/uvcdat/plots/VisIt/visit.cfg (14)
    A vistrails/core/uvcdat/plots/VisIt/visit.vt (0)
    A vistrails/core/uvcdat/plots/__init__.py (1)
    A vistrails/core/uvcdat/plots/registry.cfg (27)
    A vistrails/core/uvcdat/utils.py (43)
    A vistrails/core/uvcdat/variable.py (46)
    M vistrails/core/vistrail/controller.py (460)
    M vistrails/core/vistrail/pipeline.py (10)
    M vistrails/core/vistrail/vistrail.py (14)
    M vistrails/db/services/io.py (35)
    M vistrails/db/services/locator.py (8)
    M vistrails/db/services/opm.py (19)
    M vistrails/db/versions/v1_0_2/domain/auto_gen.py (5)
    M vistrails/db/versions/v1_0_2/specs/all.xml (2)
    M vistrails/gui/application.py (177)
    M vistrails/gui/application_server.py (104)
    M vistrails/gui/builder_window.py (21)
    T vistrails/gui/bundles/linux_fedora_install.py (0)
    M vistrails/gui/bundles/linux_ubuntu_install.py (3)
    M vistrails/gui/collection/vis_log.py (50)
    M vistrails/gui/collection/workspace.py (331)
    M vistrails/gui/common_widgets.py (3)
    M vistrails/gui/configuration.py (14)
    M vistrails/gui/debug.py (19)
    M vistrails/gui/graphics_view.py (9)
    M vistrails/gui/mashups/alias_inspector.py (39)
    M vistrails/gui/mashups/mashup_app.py (23)
    M vistrails/gui/mashups/mashups_widgets.py (56)
    M vistrails/gui/module_annotation.py (4)
    M vistrails/gui/module_configuration.py (17)
    M vistrails/gui/module_documentation.py (12)
    M vistrails/gui/module_info.py (19)
    M vistrails/gui/module_palette.py (2)
    M vistrails/gui/modules/constant_configuration.py (25)
    M vistrails/gui/modules/module_configure.py (48)
    T vistrails/gui/modules/port_configure.py (0)
    M vistrails/gui/modules/python_source_configure.py (18)
    T vistrails/gui/modules/resources/colorconfig_rc.py (0)
    M vistrails/gui/modules/source_configure.py (16)
    M vistrails/gui/modules/tuple_configuration.py (78)
    M vistrails/gui/paramexplore/pe_tab.py (7)
    M vistrails/gui/paramexplore/pe_table.py (4)
    M vistrails/gui/paramexplore/virtual_cell.py (2)
    M vistrails/gui/pipeline_view.py (515)
    M vistrails/gui/ports_pane.py (72)
    M vistrails/gui/preferences.py (103)
    M vistrails/gui/publishing.py (2)
    M vistrails/gui/query_view.py (18)
    M vistrails/gui/repository.py (2)
    A vistrails/gui/resources/images/UV-CDAT_logo_sites.gif (0)
    T vistrails/gui/resources/images/camera_mount.png (0)
    T vistrails/gui/resources/images/copy.png (0)
    T vistrails/gui/resources/images/down.png (0)
    T vistrails/gui/resources/images/dragging.png (0)
    T vistrails/gui/resources/images/edit_add.png (0)
    T vistrails/gui/resources/images/editcopy.png (0)
    T vistrails/gui/resources/images/editdelete.png (0)
    T vistrails/gui/resources/images/export.png (0)
    T vistrails/gui/resources/images/import.png (0)
    I vistrails/gui/resources/images/make_kdevelop.png (0)

-- Patch Links --

https://github.com/VisTrails/VisTrails/pull/1003.patch
https://github.com/VisTrails/VisTrails/pull/1003.diff

---
Reply to this email directly or view it on GitHub:
https://github.com/VisTrails/VisTrails/pull/1003
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