<p>The faulty diff is fixed by <a href="https://github.com/VisTrails/VisTrails/commit/bc096e4d58e69133d76e677f761e781ab857e43e" class="commit-link"><tt>bc096e4</tt></a>. An indexing bug caused the wrong spec to get deleted. I am surprised this bug has not been detected before. The new code must cause more deletions or index rearrangements.</p>

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